RT Journal
A1 Florea, Liliana
A1 Hartzell, George
A1 Zhang, Zheng
A1 Rubin, Gerald M.
A1 Miller, Webb
T1 A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence
JF Genome Research 
JO Genome Research 
YR 1998 
FD September 01 
VO 8 
IS 9 
SP 967 
OP 974 
DO 10.1101/gr.8.9.967 
UL http://genome.cshlp.org/content/8/9/967.abstract 
AB We address the problem of efficiently aligning a transcribed and spliced DNA sequence with a genomic sequence containing that gene, allowing for introns in the genomic sequence and a relatively small number of sequencing errors. A freely available computer program, described herein, solves the problem for a 100-kb genomic sequence in a few seconds on a workstation.