TY - JOUR A1 - Florea, Liliana A1 - Hartzell, George A1 - Zhang, Zheng A1 - Rubin, Gerald M. A1 - Miller, Webb T1 - A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence Y1 - 1998/09/01 JF - Genome Research JO - Genome Research SP - 967 EP - 974 DO - 10.1101/gr.8.9.967 VL - 8 IS - 9 UR - http://genome.cshlp.org/content/8/9/967.abstract N2 - We address the problem of efficiently aligning a transcribed and spliced DNA sequence with a genomic sequence containing that gene, allowing for introns in the genomic sequence and a relatively small number of sequencing errors. A freely available computer program, described herein, solves the problem for a 100-kb genomic sequence in a few seconds on a workstation. ER -