@article{Florea01091998, author = {Florea, Liliana and Hartzell, George and Zhang, Zheng and Rubin, Gerald M. and Miller, Webb}, title = {A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence}, volume = {8}, number = {9}, pages = {967-974}, year = {1998}, doi = {10.1101/gr.8.9.967}, abstract ={We address the problem of efficiently aligning a transcribed and spliced DNA sequence with a genomic sequence containing that gene, allowing for introns in the genomic sequence and a relatively small number of sequencing errors. A freely available computer program, described herein, solves the problem for a 100-kb genomic sequence in a few seconds on a workstation.}, URL = {http://genome.cshlp.org/content/8/9/967.abstract}, eprint = {http://genome.cshlp.org/content/8/9/967.full.pdf+html}, journal = {Genome Research} }