RT Journal
A1 Bzikadze, Andrey V.
A1 Mikheenko, Alla
A1 Pevzner, Pavel A.
T1 Fast and accurate mapping of long reads to complete genome assemblies with VerityMap
JF Genome Research 
JO Genome Research 
YR 2022 
FD November 01 
VO 32 
IS 11-12 
SP 2107 
OP 2118 
DO 10.1101/gr.276871.122 
UL http://genome.cshlp.org/content/32/11-12/2107.abstract 
AB Recent advancements in long-read sequencing have enabled the telomere-to-telomere (complete) assembly of a human genome and are now contributing to the haplotype-resolved complete assemblies of multiple human genomes. Because the accuracy of read mapping tools deteriorates in highly repetitive regions, there is a need to develop accurate, error-exposing (detecting potential assembly errors), and diploid-aware (distinguishing different haplotypes) tools for read mapping in complete assemblies. We describe the first accurate, error-exposing, and partially diploid-aware VerityMap tool for long-read mapping to complete assemblies.