TY - JOUR A1 - Li, Kai A1 - Xu, Jiayue A1 - Luo, Yanyun A1 - Zou, Dingfeng A1 - Han, Ruiqin A1 - Zhong, Shunshun A1 - Zhao, Qing A1 - Mang, Xinyu A1 - Li, Mengzhen A1 - Si, Yanmin A1 - Lu, Yan A1 - Li, Pengyu A1 - Jin, Cheng A1 - Wang, Zhipeng A1 - Wang, Fang A1 - Miao, Shiying A1 - Wen, Bo A1 - Wang, Linfang A1 - Ma, Yanni A1 - Yu, Jia A1 - Song, Wei T1 - Panoramic transcriptome analysis and functional screening of long noncoding RNAs in mouse spermatogenesis Y1 - 2021/01/01 JF - Genome Research JO - Genome Research SP - 13 EP - 26 DO - 10.1101/gr.264333.120 VL - 31 IS - 1 UR - http://genome.cshlp.org/content/31/1/13.abstract N2 - Long noncoding RNAs (lncRNAs) have emerged as diverse functional regulators involved in mammalian development; however, large-scale functional investigation of lncRNAs in mammalian spermatogenesis in vivo is lacking. Here, we delineated the global lncRNA expression landscape in mouse spermatogenesis and identified 968 germ cell signature lncRNAs. By combining bioinformatics and functional screening, we identified three functional lncRNAs (Gm4665, 1700027A15Rik, and 1700052I22Rik) that directly influence spermatogenesis in vivo. Knocking down Gm4665 hampered the development of round spermatids into elongating spermatids and disrupted key spermatogenic gene expression. Mechanistically, lncRNA Gm4665 localized in the nucleus of round spermatids and occupied the genomic regulatory region of important spermatogenic genes including Ip6k1 and Akap3. These findings provide a valuable resource and framework for future functional analysis of lncRNAs in spermatogenesis and their potential roles in other biological processes. ER -