TY  - JOUR
A1  - Yu, Ting
A1  - Mu, Zengchao
A1  - Fang, Zhaoyuan
A1  - Liu, Xiaoping
A1  - Gao, Xin
A1  - Liu, Juntao
T1  - TransBorrow: genome-guided transcriptome assembly by borrowing assemblies from different assemblers
Y1  - 2020/08/01 
JF  - Genome Research 
JO  - Genome Research 
SP  - 1181 
EP  - 1190 
DO  - 10.1101/gr.257766.119 
VL  - 30 
IS  - 8 
UR  - http://genome.cshlp.org/content/30/8/1181.abstract 
N2  - RNA-seq technology is widely used in various transcriptomic studies and provides great opportunities to reveal the complex structures of transcriptomes. To effectively analyze RNA-seq data, we introduce a novel transcriptome assembler, TransBorrow, which borrows the assemblies from different assemblers to search for reliable subsequences by building a colored graph from those borrowed assemblies. Then, by seeding reliable subsequences, a newly designed path extension strategy accurately searches for a transcript-representing path cover over each splicing graph. TransBorrow was tested on both simulated and real data sets and showed great superiority over all the compared leading assemblers. 
ER  -