@article{Zhou01092018,
author = {Zhou, Zhemin and Alikhan, Nabil-Fareed and Sergeant, Martin J. and Luhmann, Nina and Vaz, Cátia and Francisco, Alexandre P. and Carriço, João André and Achtman, Mark}, 
title = {GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens},
volume = {28}, 
number = {9}, 
pages = {1395-1404}, 
year = {2018}, 
doi = {10.1101/gr.232397.117}, 
abstract ={Current methods struggle to reconstruct and visualize the genomic relationships of large numbers of bacterial genomes. GrapeTree facilitates the analyses of large numbers of allelic profiles by a static “GrapeTree Layout” algorithm that supports interactive visualizations of large trees within a web browser window. GrapeTree also implements a novel minimum spanning tree algorithm (MSTree V2) to reconstruct genetic relationships despite high levels of missing data. GrapeTree is a stand-alone package for investigating phylogenetic trees plus associated metadata and is also integrated into EnteroBase to facilitate cutting edge navigation of genomic relationships among bacterial pathogens.}, 
URL = {http://genome.cshlp.org/content/28/9/1395.abstract}, 
eprint = {http://genome.cshlp.org/content/28/9/1395.full.pdf+html}, 
journal = {Genome Research} 
}