RT Journal A1 Eveland, Andrea L. A1 Goldshmidt, Alexander A1 Pautler, Michael A1 Morohashi, Kengo A1 Liseron-Monfils, Christophe A1 Lewis, Michael W. A1 Kumari, Sunita A1 Hiraga, Susumu A1 Yang, Fang A1 Unger-Wallace, Erica A1 Olson, Andrew A1 Hake, Sarah A1 Vollbrecht, Erik A1 Grotewold, Erich A1 Ware, Doreen A1 Jackson, David T1 Regulatory modules controlling maize inflorescence architecture JF Genome Research JO Genome Research YR 2014 FD March 01 VO 24 IS 3 SP 431 OP 443 DO 10.1101/gr.166397.113 UL http://genome.cshlp.org/content/24/3/431.abstract AB Genetic control of branching is a primary determinant of yield, regulating seed number and harvesting ability, yet little is known about the molecular networks that shape grain-bearing inflorescences of cereal crops. Here, we used the maize (Zea mays) inflorescence to investigate gene networks that modulate determinacy, specifically the decision to allow branch growth. We characterized developmental transitions by associating spatiotemporal expression profiles with morphological changes resulting from genetic perturbations that disrupt steps in a pathway controlling branching. Developmental dynamics of genes targeted in vivo by the transcription factor RAMOSA1, a key regulator of determinacy, revealed potential mechanisms for repressing branches in distinct stem cell populations, including interactions with KNOTTED1, a master regulator of stem cell maintenance. Our results uncover discrete developmental modules that function in determining grass-specific morphology and provide a basis for targeted crop improvement and translation to other cereal crops with comparable inflorescence architectures.