RT Journal A1 Pravenec, Michal A1 Hyakukoku, Masaya A1 Houstek, Josef A1 Zidek, Vaclav A1 Landa, Vladimir A1 Mlejnek, Petr A1 Miksik, Ivan A1 Dudová-Mothejzikova, Kristyna A1 Pecina, Petr A1 Vrbacký, Marek A1 Drahota, Zdenek A1 Vojtiskova, Alena A1 Mracek, Tomas A1 Kazdova, Ludmila A1 Oliyarnyk, Olena A1 Wang, Jiaming A1 Ho, Christopher A1 Qi, Nathan A1 Sugimoto, Ken A1 Kurtz, Theodore T1 Direct linkage of mitochondrial genome variation to risk factors for type 2 diabetes in conplastic strains JF Genome Research JO Genome Research YR 2007 FD September 01 VO 17 IS 9 SP 1319 OP 1326 DO 10.1101/gr.6548207 UL http://genome.cshlp.org/content/17/9/1319.abstract AB Recently, the relationship of mitochondrial DNA (mtDNA) variants to metabolic risk factors for diabetes and other common diseases has begun to attract increasing attention. However, progress in this area has been limited because (1) the phenotypic effects of variation in the mitochondrial genome are difficult to isolate owing to confounding variation in the nuclear genome, imprinting phenomena, and environmental factors; and (2) few animal models have been available for directly investigating the effects of mtDNA variants on complex metabolic phenotypes in vivo. Substitution of different mitochondrial genomes on the same nuclear genetic background in conplastic strains provides a way to unambiguously isolate effects of the mitochondrial genome on complex traits. Here we show that conplastic strains of rats with identical nuclear genomes but divergent mitochondrial genomes that encode amino acid differences in proteins of oxidative phosphorylation exhibit differences in major metabolic risk factors for type 2 diabetes. These results (1) provide the first direct evidence linking naturally occurring variation in the mitochondrial genome, independent of variation in the nuclear genome and other confounding factors, to inherited variation in known risk factors for type 2 diabetes; and (2) establish that spontaneous variation in the mitochondrial genome per se can promote systemic metabolic disturbances relevant to the pathogenesis of common diseases.