TY  - JOUR
A1  - Pevzner, Paul A.
A1  - Tang, Haixu
A1  - Tesler, Glenn
T1  - De Novo Repeat Classification and Fragment Assembly
Y1  - 2004/09/01 
JF  - Genome Research 
JO  - Genome Research 
SP  - 1786 
EP  - 1796 
DO  - 10.1101/gr.2395204 
VL  - 14 
IS  - 9 
UR  - http://genome.cshlp.org/content/14/9/1786.abstract 
N2  - Repetitive sequences make up a significant fraction of almost any genome, and an important and still open question in bioinformatics is how to represent all repeats in DNA sequences. We propose a new approach to repeat classification that represents all repeats in a genome as a mosaic of sub-repeats. Our key algorithmic idea also leads to new approaches to multiple alignment and fragment assembly. In particular, we show that our FragmentGluer assembler improves on Phrap and ARACHNE in assembly of BACs and bacterial genomes. 
ER  -