TY - JOUR A1 - Oyama, Masaaki A1 - Itagaki, Chiharu A1 - Hata, Hiroko A1 - Suzuki, Yutaka A1 - Izumi, Tomonori A1 - Natsume, Tohru A1 - Isobe, Toshiaki A1 - Sugano, Sumio T1 - Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs Y1 - 2004/10/15 JF - Genome Research JO - Genome Research SP - 2048 EP - 2052 DO - 10.1101/gr.2384604 VL - 14 IS - 10b UR - http://genome.cshlp.org/content/14/10b/2048.abstract N2 - To find novel short coding sequences from accumulated full-length cDNA sequences, proteomic analysis of small proteins expressed in human leukemia K562 cells was performed using high-resolution nanoflow liquid chromatography coupled with electrospray ionization tandem mass spectrometry. Our analysis led to the identification of 54 proteins not more than 100 amino acids in length, including four novel ones. These novel short coding sequences were all located upstream of the longest open reading frame (ORF) of the corresponding cDNA. Our findings indicate that the translation of short ORFs occurs in vivo whether or not there exists a longer coding region in the downstream of the mRNA. This investigation provides the first direct evidence of translation of upstream ORFs in human cells, which could greatly change the current outline of the human proteome. ER -