TY - JOUR A1 - Reese, Matthew O. A1 - van Dam, R. Michae A1 - Scherer, Axel A1 - Quake, Stephen R. T1 - Microfabricated Fountain Pens for High-Density DNA Arrays Y1 - 2003/10/01 JF - Genome Research JO - Genome Research SP - 2348 EP - 2352 DO - 10.1101/gr.623903 VL - 13 IS - 10 UR - http://genome.cshlp.org/content/13/10/2348.abstract N2 - We used photolithographic microfabrication techniques to create very small stainless steel fountain pens that were installed in place of conventional pens on a microarray spotter. Because of the small feature size produced by the microfabricated pens, we were able to print arrays with up to 25,000 spots/cm2, significantly higher than can be achieved by other deposition methods. This feature density is sufficiently large that a standard microscope slide can contain multiple replicates of every gene in a complex organism such as a mouse or human. We tested carryover during array printing with dye solution, labeled DNA, and hybridized DNA, and we found it to be indistinguishable from background. Hybridization also showed good sequence specificity to printed oligonucleotides. In addition to improved slide capacity, the microfabrication process offers the possibility of low-cost mass-produced pens and the flexibility to include novel pen features that cannot be machined with conventional techniques. ER -