@article{Roach01072000, author = {Roach, Jared C. and Thorsson, Vesteinn and Siegel, Andrew F.}, title = {Parking Strategies for Genome Sequencing}, volume = {10}, number = {7}, pages = {1020-1030}, year = {2000}, doi = {10.1101/gr.10.7.1020}, abstract ={The parking strategy is an iterative approach to DNA sequencing. Each iteration consists of sequencing a novel portion of target DNA that does not overlap any previously sequenced region. Subject to the constraint of no overlap, each new region is chosen randomly. A parking strategy is often ideal in the early stages of a project for rapidly generating unique data. As a project progresses, parking becomes progressively more expensive and eventually prohibitive. We present a mathematical model with a generalization to allow for overlaps. This model predicts multiple parameters, including progress, costs, and the distribution of gap sizes left by a parking strategy. The highly fragmented nature of the gaps left after an initial parking strategy may make it difficult to finish a project efficiently. Therefore, in addition to our parking model, we model gap closing by walking. Our gap-closing model is generalizable to many other strategies. Our discussion includes modified parking strategies and hybrids with other strategies. A hybrid parking strategy has been employed for portions of the Human Genome Project.}, URL = {http://genome.cshlp.org/content/10/7/1020.abstract}, eprint = {http://genome.cshlp.org/content/10/7/1020.full.pdf+html}, journal = {Genome Research} }