Searching journal content for articles similar to Booth et al. 26 (6): 799.

Displaying results 1-10 of 19

For checked items

view abstracts
download to citation manager

Select this article
Corrigendum: Corrigendum: Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast
- Gregory T. Booth,
- Isabel X. Wang,
- Vivian G. Cheung,
- and John T. Lis
Genome Res. July 2016 26: 1010-1011; doi:10.1101/gr.210161.116
OPEN ACCESS ARTICLE
Select this article
Resource: High-quality assembly of the Chinese white truffle genome and recalibrated divergence time estimate provide insight into the evolutionary dynamics of Tuberaceae
- Jacopo Martelossi,
- Jacopo Vujovic,
- Yue Huang,
- Alessia Tatti,
- Kaiwei Xu,
- Federico Puliga,
- Yuanxue Chen,
- Omar Rota Stabelli,
- Fabrizio Ghiselli,
- Xiaoping Zhang,
- and Alessandra Zambonelli
Genome Res. November 2025 35: 2601-2616; Published in Advance August 21, 2025, doi:10.1101/gr.280368.124
...fusions or fissions. Also, the comparison of T. panzhihuanense with the long-read-based high-quality Morchella sextelata M. Kuo assembly revealed relatively high levels of mesosynteny conservation between the two species (Fig. 5B; Supplemental Fig. S14B). Indeed, 61% of the T. panzhihuanense and 70...
Select this article
Method: Delineating yeast cleavage and polyadenylation signals using deep learning
- Emily Kunce Stroup and
- Zhe Ji
Genome Res. July 2024 34: 1066-1080; Published in Advance June 24, 2024, doi:10.1101/gr.278606.123
...learning model to reveal the distinct motif configuration of S. pombe poly(A) sites, which show more precise cleavage than S. cerevisiae. Altogether, our deep learning models provide unprecedented insights into poly(A) site formation of yeast species, and our results highlight divergent poly(A) signals...
Select this article
Method: System-wide analyses of the fission yeast poly(A)⁺ RNA interactome reveal insights into organization and function of RNA–protein complexes
- Cornelia Kilchert,
- Tea Kecman,
- Emily Priest,
- Svenja Hester,
- Ebru Aydin,
- Krzysztof Kus,
- Oliver Rossbach,
- Alfredo Castello,
- Shabaz Mohammed,
- and Lidia Vasiljeva
Genome Res. July 2020 30: 1012-1026; Published in Advance June 18, 2020, doi:10.1101/gr.257006.119
...in gene expression and orchestrate production, function, and turnover of mRNAs. The accuracy and dynamics of RNA–protein interactions within these molecular machines are essential for their function and are mediated by RNA-binding proteins (RBPs). Here, we show that fission yeast whole-cell poly(A)+ RNA...
OPEN ACCESS ARTICLE
Select this article
Research: The origin and evolution of a distinct mechanism of transcription initiation in yeasts
- Zhaolian Lu and
- Zhenguo Lin
Genome Res. January 2021 31: 51-63; Published in Advance November 20, 2020, doi:10.1101/gr.264325.120
...elements in this key process of the central dogma of molecular biology.ResultsEvolutionary dynamics of transcription initiation landscapes in yeastsWe generated high-resolution TSS maps for 10 budding yeast species and two fission yeast species, including S. cerevisiae, S. pombe, and other important...
Select this article
Resource: Pervasive and dynamic transcription initiation in Saccharomyces cerevisiae
- Zhaolian Lu and
- Zhenguo Lin
Genome Res. July 2019 29: 1198-1210; Published in Advance May 10, 2019, doi:10.1101/gr.245456.118
...using no-amplification nontagging Cap analysis of gene expression (nAnT-iCAGE) sequencing. We mapped ∼1 million well-supported TSSs, suggesting highly pervasive transcription initiation in the compact of the budding yeast. The comprehensive TSS maps allowed us to identify core promoters for ∼96...
Select this article
Resource: A systematic analysis of Trypanosoma brucei chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination
- Desislava P. Staneva,
- Roberta Carloni,
- Tatsiana Auchynnikava,
- Pin Tong,
- Juri Rappsilber,
- A. Arockia Jeyaprakash,
- Keith R. Matthews,
- and Robin C. Allshire
Genome Res. November 2021 31: 2138-2154; Published in Advance August 18, 2021, doi:10.1101/gr.275368.121
...association patternsIn yeast, in which many RNAPII genes are transcriptionally regulated, a group of chromatin regulators are enriched specifically at promoters, where they assist in transcription initiation, whereas others travel with RNAPII into gene bodies, aiding transcription elongation, splicing...
OPEN ACCESS ARTICLE
Select this article
Letter: Nitrogen depletion in the fission yeast Schizosaccharomyces pombe causes nucleosome loss in both promoters and coding regions of activated genes
- Carolina Kristell,
- Jakub Orzechowski Westholm,
- Ida Olsson,
- Hans Ronne,
- Jan Komorowski,
- and Pernilla Bjerling
Genome Res. March 2010 20: 361-371; Published in Advance January 19, 2010, doi:10.1101/gr.098558.109
...in chromatin during the transcriptional response to heat shock in the budding yeast Saccharomyces cerevisiae revealed nucleosome eviction in promoter regions but only minor effects in coding regions. Here, we describe the short-term response to nitrogen starvation in the fission yeast Schizosaccharomyces...
OPEN ACCESS ARTICLE
Select this article
Research: Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast
- C. Joel McManus,
- Gemma E. May,
- Pieter Spealman,
- and Alan Shteyman
Genome Res. March 2014 24: 422-430; Published in Advance December 6, 2013, doi:10.1101/gr.164996.113
...Ribosome profiling reveals post-transcriptional buffering of divergent gene expression in yeast C. Joel McManus 1 , Gemma E. May , Pieter Spealman and Alan Shteyman Carnegie Mellon University, Department of Biological Sciences, Pittsburgh...
OPEN ACCESS ARTICLE
Select this article
Research: Intergenic accumulation of RNA polymerase II maintains the potential for swift transcriptional restart upon release from quiescence
- Manuela Baquero Pérez,
- Gertjan Laenen,
- Isabelle Loïodice,
- Mickaël Garnier,
- Ugo Szachnowski,
- Antonin Morillon,
- Myriam Ruault,
- and Angela Taddei
Genome Res. October 2025 35: 2226-2239; Published in Advance August 12, 2025, doi:10.1101/gr.279874.124
...to the general belief that it does not occur. Although the negative elongation factor (NELF), absent in budding yeast, is linked to stable transcriptional pausing, it is not essential as shown in Schizosaccharomyces pombe (Booth et al. 2018; Core and Adelman 2019). To our knowledge, few reports of promoter...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Booth et al. 26 (6): 799.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: