Searching journal content for R. Alan Harris in author.

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  1. Method: Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis
    • Romain Derelle,
    • Johanna von Wachsmann,
    • Tommi Mäklin,
    • Joel Hellewell,
    • Timothy Russell,
    • Ajit Lalvani,
    • Leonid Chindelevitch,
    • Nicholas J. Croucher,
    • Simon R. Harris,
    • and John A. Lees
    Genome Res. October 2024 34: 1661-1673; Published in Advance October 15, 2024, doi:10.1101/gr.279449.124
    OPEN ACCESS ARTICLE
  2. Method: Accurate sequencing of DNA motifs able to form alternative (non-B) structures
    • Matthias H. Weissensteiner,
    • Marzia A. Cremona,
    • Wilfried M. Guiblet,
    • Nicholas Stoler,
    • Robert S. Harris,
    • Monika Cechova,
    • Kristin A. Eckert,
    • Francesca Chiaromonte,
    • Yi-Fei Huang,
    • and Kateryna D. Makova
    Genome Res. July 11, 2023 ; Published in Advance July 11, 2023, doi:10.1101/gr.277490.122
    OPEN ACCESS ARTICLE
  3. Research: Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability
    • Richard J. Wang,
    • Gregg W.C. Thomas,
    • Muthuswamy Raveendran,
    • R. Alan Harris,
    • Harshavardhan Doddapaneni,
    • Donna M. Muzny,
    • John P. Capitanio,
    • Predrag Radivojac,
    • Jeffrey Rogers,
    • and Matthew W. Hahn
    Genome Res. June 2020 30: 826-834; Published in Advance May 27, 2020, doi:10.1101/gr.255174.119
  4. Method: Fast and flexible bacterial genomic epidemiology with PopPUNK
    • John A. Lees,
    • Simon R. Harris,
    • Gerry Tonkin-Hill,
    • Rebecca A. Gladstone,
    • Stephanie W. Lo,
    • Jeffrey N. Weiser,
    • Jukka Corander,
    • Stephen D. Bentley,
    • and Nicholas J. Croucher
    Genome Res. February 2019 29: 304-316; Published in Advance January 24, 2019, doi:10.1101/gr.241455.118
    OPEN ACCESS ARTICLE
  5. Research: Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate
    • Wilfried M. Guiblet,
    • Marzia A. Cremona,
    • Monika Cechova,
    • Robert S. Harris,
    • Iva Kejnovská,
    • Eduard Kejnovsky,
    • Kristin Eckert,
    • Francesca Chiaromonte,
    • and Kateryna D. Makova
    Genome Res. December 2018 28: 1767-1778; Published in Advance November 6, 2018, doi:10.1101/gr.241257.118
    OPEN ACCESS ARTICLE
  6. Research: Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131
    • Teemu Kallonen,
    • Hayley J. Brodrick,
    • Simon R. Harris,
    • Jukka Corander,
    • Nicholas M. Brown,
    • Veronique Martin,
    • Sharon J. Peacock,
    • and Julian Parkhill
    Genome Res. August 2017 27: 1437-1449; Published in Advance July 18, 2017, doi:10.1101/gr.216606.116
    OPEN ACCESS ARTICLE
  7. Research: Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion
    • James Hadfield,
    • Simon R. Harris,
    • Helena M.B. Seth-Smith,
    • Surendra Parmar,
    • Patiyan Andersson,
    • Philip M. Giffard,
    • Julius Schachter,
    • Jeanne Moncada,
    • Louise Ellison,
    • María Lucía Gallo Vaulet,
    • Marcelo Rodríguez Fermepin,
    • Frans Radebe,
    • Suyapa Mendoza,
    • Sander Ouburg,
    • Servaas A. Morré,
    • Konrad Sachse,
    • Mirja Puolakkainen,
    • Suvi J. Korhonen,
    • Chris Sonnex,
    • Rebecca Wiggins,
    • Hamid Jalal,
    • Tamara Brunelli,
    • Patrizia Casprini,
    • Rachel Pitt,
    • Cathy Ison,
    • Alevtina Savicheva,
    • Elena Shipitsyna,
    • Ronza Hadad,
    • Laszlo Kari,
    • Matthew J. Burton,
    • David Mabey,
    • Anthony W. Solomon,
    • David Lewis,
    • Peter Marsh,
    • Magnus Unemo,
    • Ian N. Clarke,
    • Julian Parkhill,
    • and Nicholas R. Thomson
    Genome Res. July 2017 27: 1220-1229; Published in Advance June 6, 2017, doi:10.1101/gr.212647.116
    OPEN ACCESS ARTICLE
  8. Research: The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences
    • Cheng Xue,
    • Muthuswamy Raveendran,
    • R. Alan Harris,
    • Gloria L. Fawcett,
    • Xiaoming Liu,
    • Simon White,
    • Mahmoud Dahdouli,
    • David Rio Deiros,
    • Jennifer E. Below,
    • William Salerno,
    • Laura Cox,
    • Guoping Fan,
    • Betsy Ferguson,
    • Julie Horvath,
    • Zach Johnson,
    • Sree Kanthaswamy,
    • H. Michael Kubisch,
    • Dahai Liu,
    • Michael Platt,
    • David G. Smith,
    • Binghua Sun,
    • Eric J. Vallender,
    • Feng Wang,
    • Roger W. Wiseman,
    • Rui Chen,
    • Donna M. Muzny,
    • Richard A. Gibbs,
    • Fuli Yu,
    • and Jeffrey Rogers
    Genome Res. December 2016 26: 1651-1662; Published in Advance October 17, 2016, doi:10.1101/gr.204255.116
    OPEN ACCESS ARTICLE
  9. Research: Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently
    • Sophia David,
    • Christophe Rusniok,
    • Massimo Mentasti,
    • Laura Gomez-Valero,
    • Simon R. Harris,
    • Pierre Lechat,
    • John Lees,
    • Christophe Ginevra,
    • Philippe Glaser,
    • Laurence Ma,
    • Christiane Bouchier,
    • Anthony Underwood,
    • Sophie Jarraud,
    • Timothy G. Harrison,
    • Julian Parkhill,
    • and Carmen Buchrieser
    Genome Res. November 2016 26: 1555-1564; Published in Advance September 23, 2016, doi:10.1101/gr.209536.116
    OPEN ACCESS ARTICLE
  10. Method: A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y
    • Marta Tomaszkiewicz,
    • Samarth Rangavittal,
    • Monika Cechova,
    • Rebeca Campos Sanchez,
    • Howard W. Fescemyer,
    • Robert Harris,
    • Danling Ye,
    • Patricia C.M. O'Brien,
    • Rayan Chikhi,
    • Oliver A. Ryder,
    • Malcolm A. Ferguson-Smith,
    • Paul Medvedev,
    • and Kateryna D. Makova
    Genome Res. April 2016 26: 530-540; Published in Advance March 2, 2016, doi:10.1101/gr.199448.115
    OPEN ACCESS ARTICLE
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